I am having the same issue right now. I am actually on a trip to Florida right now. I left Saturday morning and drove about 300 miles. I stop to get something to eat, the truck seemed like it lost power, and at a stop it was idling a little rough. After getting back on the road it ran fine at 70-75mph. I stoped a couple more times to see if it was still doing it. On one stop it was idling like crap the other wasn't to bad. I scanned several times with my scangauge and nothing came up. I decided to find a ford Dealer and pay the hundred dollar diag fee and see if they could figure it out. The ford dealer in gainsville Fl was the only one open on Saturday that had a diesel tech working. When I got off the interstate in gainsville it was running like total crap. The worst it had been all day. Sitting in traffic it was cutting out and surging. When I hit the gas it smoothed out and ran fine. The ford dealer was about 10 miles off the interstate, by the time I made there it had smoothed out and was running fine. They scanned it, drove with the scanner hooked to it and of course found nothing. No cranking issues, no smoke, no stumbling at idle. Nothing. So, I got back on the road and finished my trip, about another 100 miles. I drove it hard and could not duplicate the problem.
My question(s) are: if I program my scangauge to read the crankshaft sensor. And the crank/cam sync. What kinda numbers should I get? And how big of an *** pain is it to change this sensor?